PH01000012G2160's details annotation
1.Annotation
ICBR annotation: OsProCP4 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
Blast result AT4G36195 : 4.00E-146
Blast annotation: Serine carboxypeptidase S28 family protein
2.Location
Scaffold: PH01000012
Strand: +
| Region | Start | End |
| gene | 1399499 | 1404300 |
| mRNA | 1399499 | 1404300 |
| exon | 1399499 | 1399922 |
| exon | 1400158 | 1400290 |
| exon | 1400376 | 1400531 |
| exon | 1400614 | 1400799 |
| exon | 1400928 | 1401044 |
| exon | 1401197 | 1401250 |
| exon | 1401331 | 1401402 |
| exon | 1401586 | 1401691 |
| exon | 1401801 | 1401897 |
| exon | 1402233 | 1402270 |
| exon | 1402709 | 1402783 |
| exon | 1402924 | 1403044 |
| exon | 1403566 | 1403668 |
| exon | 1403996 | 1404300 |
| CDS | 1399804 | 1399922 |
| CDS | 1400158 | 1400290 |
| CDS | 1400376 | 1400531 |
| CDS | 1400614 | 1400799 |
| CDS | 1400928 | 1401044 |
| CDS | 1401197 | 1401250 |
| CDS | 1401331 | 1401402 |
| CDS | 1401586 | 1401691 |
| CDS | 1401801 | 1401897 |
| CDS | 1402233 | 1402270 |
| CDS | 1402709 | 1402783 |
| CDS | 1402924 | 1403044 |
| CDS | 1403566 | 1403668 |
| CDS | 1403996 | 1404052 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000446 | microtubule associated complex, microtubule-based movement, microtubule motor activity, katanin_complex microtubule_severing microtubule binding, serine-type peptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05577.11 | Peptidase_S28 | 42 | 360 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008236 | serine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.