PH01000012G2420's details annotation
1.Annotation
ICBR annotation: aquaporin protein, putative, expressed
Blast result AT4G10380 : 7.50E-63
Blast annotation: NOD26-like intrinsic protein 5;1
2.Location
Scaffold: PH01000012
Strand: -
| Region | Start | End |
| gene | 1643309 | 1648390 |
| mRNA | 1643309 | 1648390 |
| exon | 1643309 | 1644170 |
| exon | 1644359 | 1644408 |
| exon | 1644719 | 1644816 |
| exon | 1644904 | 1645021 |
| exon | 1645184 | 1645281 |
| exon | 1645369 | 1645525 |
| exon | 1647179 | 1647406 |
| exon | 1647469 | 1647530 |
| exon | 1647636 | 1648061 |
| exon | 1648191 | 1648390 |
| CDS | 1643875 | 1644170 |
| CDS | 1644359 | 1644408 |
| CDS | 1644719 | 1644816 |
| CDS | 1644904 | 1645021 |
| CDS | 1645184 | 1645281 |
| CDS | 1645369 | 1645525 |
| CDS | 1647179 | 1647406 |
| CDS | 1647469 | 1647530 |
| CDS | 1647636 | 1648061 |
| CDS | 1648191 | 1648322 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00230.19 | MIP | 47 | 209 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.