PH01000012G2610's details annotation
1.Annotation
ICBR annotation: glycine cleavage system H protein, putative, expressed
Blast result AT1G32470 : 1.70E-58
Blast annotation: Single hybrid motif superfamily protein
2.Location
Scaffold: PH01000012
Strand: +
| Region | Start | End |
| gene | 1786287 | 1788918 |
| mRNA | 1786287 | 1788918 |
| exon | 1786287 | 1787566 |
| exon | 1787952 | 1788040 |
| exon | 1788254 | 1788424 |
| exon | 1788519 | 1788918 |
| CDS | 1787461 | 1787566 |
| CDS | 1787952 | 1788040 |
| CDS | 1788254 | 1788424 |
| CDS | 1788519 | 1788644 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01597.18 | GCV_H | 40 | 159 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glyoxylate and dicarboxylate metabolism | glycine cleavage system H protein | ko00630 | K02437 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005960 | glycine cleavage complex |
| GO:0006546 | glycine catabolic process |
| GO:0019464 | glycine decarboxylation via glycine cleavage system |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.