PH01000013G0080's details annotation
1.Annotation
ICBR annotation: transcription factor HBP-1b, putative, expressed
Blast result AT1G68640 : 1.00E-96
Blast annotation: bZIP transcription factor family protein
2.Location
Scaffold: PH01000013
Strand: +
| Region | Start | End |
| gene | 91677 | 99081 |
| mRNA | 91677 | 99081 |
| exon | 91677 | 94185 |
| exon | 96344 | 96427 |
| exon | 96514 | 96573 |
| exon | 97055 | 97132 |
| exon | 97212 | 97263 |
| exon | 97434 | 97705 |
| exon | 97848 | 98093 |
| exon | 98512 | 98603 |
| exon | 98648 | 99081 |
| CDS | 94120 | 94185 |
| CDS | 96344 | 96427 |
| CDS | 96514 | 96573 |
| CDS | 97055 | 97132 |
| CDS | 97212 | 97263 |
| CDS | 97434 | 97705 |
| CDS | 97848 | 98093 |
| CDS | 98512 | 98603 |
| CDS | 98648 | 98795 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000531 | transmembrane transport, Plant_hormone_signal_transduction |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 50 | 91 |
| PF14144.5 | DOG1 | 132 | 207 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | transcription factor TGA | ko04075 | K14431 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.