PH01000013G1480's details annotation
1.Annotation
ICBR annotation: NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed
Blast result AT5G52840 : 9.90E-64
Blast annotation: NADH-ubiquinone oxidoreductase-related
2.Location
Scaffold: PH01000013
Strand: -
| Region | Start | End |
| gene | 970367 | 973404 |
| mRNA | 970367 | 973404 |
| exon | 970367 | 970655 |
| exon | 972518 | 973404 |
| CDS | 970471 | 970655 |
| CDS | 972518 | 972854 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000041 | Oxidative_phosphorylation respiratory electron transport chain, mitochondrial inner membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04716.13 | ETC_C1_NDUFA5 | 30 | 96 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [EC:1.6.5.3;EC:1.6.99.3] | ko00190 | K03949 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005743 | mitochondrial inner membrane |
| GO:0016651 | oxidoreductase activity, acting on NAD(P)H |
| GO:0022904 | respiratory electron transport chain |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.