PH01000013G1830's details annotation
1.Annotation
ICBR annotation: EF hand family protein, putative, expressed
Blast result AT5G49480 : 3.10E-32
Blast annotation: Ca2+-binding protein 1
2.Location
Scaffold: PH01000013
Strand: -
| Region | Start | End |
| gene | 1223591 | 1224314 |
| mRNA | 1223591 | 1224314 |
| exon | 1223591 | 1224314 |
| CDS | 1223728 | 1224216 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000345 | WRKY Transcription_Regulator(from PlantTFDB) RLK-Pelle_WAK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13499.5 | EF-hand_7 | 17 | 78 |
| PF13202.5 | EF-hand_5 | 99 | 121 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.