PH01000013G1920's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G16180 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01000013
Strand: -
| Region | Start | End |
| gene | 1286782 | 1297477 |
| mRNA | 1286782 | 1297477 |
| exon | 1286782 | 1286972 |
| exon | 1287307 | 1287363 |
| exon | 1287681 | 1287854 |
| exon | 1287946 | 1288005 |
| exon | 1288426 | 1288651 |
| exon | 1288756 | 1288875 |
| exon | 1289207 | 1289361 |
| exon | 1289499 | 1289585 |
| exon | 1290133 | 1290321 |
| exon | 1291288 | 1291414 |
| exon | 1292315 | 1292533 |
| exon | 1292728 | 1292946 |
| exon | 1293346 | 1293419 |
| exon | 1293995 | 1294190 |
| exon | 1294645 | 1294808 |
| exon | 1295595 | 1295759 |
| exon | 1295859 | 1295933 |
| exon | 1296031 | 1296225 |
| exon | 1296965 | 1297477 |
| CDS | 1286895 | 1286972 |
| CDS | 1287307 | 1287363 |
| CDS | 1287681 | 1287854 |
| CDS | 1287946 | 1288005 |
| CDS | 1288426 | 1288651 |
| CDS | 1288756 | 1288875 |
| CDS | 1289207 | 1289361 |
| CDS | 1289499 | 1289585 |
| CDS | 1290133 | 1290321 |
| CDS | 1291288 | 1291414 |
| CDS | 1292315 | 1292533 |
| CDS | 1292728 | 1292946 |
| CDS | 1293346 | 1293419 |
| CDS | 1293995 | 1294190 |
| CDS | 1294645 | 1294808 |
| CDS | 1295595 | 1295759 |
| CDS | 1295859 | 1295933 |
| CDS | 1296031 | 1296225 |
| CDS | 1296965 | 1297015 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000448 | COPII vesicle coat, Protein_processing_in_endoplasmic_reticulum Protein_export |
| coexpression network | CFinderM000990 | MBF1 Transcription_Regulator(from iTAK) RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.