PH01000013G2480's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat domain containing protein, expressed
Blast result AT3G17040 : 1.90E-90
Blast annotation: high chlorophyll fluorescent 107
2.Location
Scaffold: PH01000013
Strand: +
| Region | Start | End |
| gene | 1726341 | 1735686 |
| mRNA | 1726341 | 1735686 |
| exon | 1726341 | 1726795 |
| exon | 1727308 | 1727405 |
| exon | 1728352 | 1728768 |
| exon | 1730421 | 1730471 |
| exon | 1730672 | 1730815 |
| exon | 1732297 | 1732602 |
| exon | 1732706 | 1732765 |
| exon | 1733151 | 1733207 |
| exon | 1733668 | 1733727 |
| exon | 1733956 | 1734049 |
| exon | 1734173 | 1734444 |
| exon | 1734953 | 1735063 |
| exon | 1735398 | 1735574 |
| exon | 1735660 | 1735686 |
| CDS | 1726672 | 1726795 |
| CDS | 1727308 | 1727405 |
| CDS | 1728352 | 1728768 |
| CDS | 1730421 | 1730471 |
| CDS | 1730672 | 1730815 |
| CDS | 1732297 | 1732602 |
| CDS | 1732706 | 1732765 |
| CDS | 1733151 | 1733207 |
| CDS | 1733668 | 1733727 |
| CDS | 1733956 | 1734049 |
| CDS | 1734173 | 1734444 |
| CDS | 1734953 | 1735063 |
| CDS | 1735398 | 1735574 |
| CDS | 1735660 | 1735671 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13432.5 | TPR_16 | 221 | 265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005622 | intracellular |
| GO:0006396 | RNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.