Annotation of co-expression genes

PH01000014G0390's details annotation

1.Annotation

ICBR annotation: sucrose synthase, putative, expressed

Blast result AT3G43190 : 0.00E+00
Blast annotation: sucrose synthase 4

2.Location

Scaffold: PH01000014
Strand: -

RegionStartEnd
gene255504261192
mRNA255504261192
exon255504255737
exon255846255984
exon256297256541
exon256672256990
exon257327257551
exon257638257804
exon257885258001
exon258082258255
exon258353258448
exon258531258747
exon258843258961
exon259136259328
exon259442259593
exon259681259801
exon260938261192
CDS255690255737
CDS255846255984
CDS256297256541
CDS256672256990
CDS257327257551
CDS257638257804
CDS257885258001
CDS258082258255
CDS258353258448
CDS258531258747
CDS258843258961
CDS259136259328
CDS259442259593
CDS259681259801
CDS260938261032

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT4

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00862.18Sucrose_synth7550
PF00534.19Glycos_transf_1555736

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismsucrose synthase [EC:2.4.1.13]ko00500K00695

10.Gene Ontology

GO AccessionGO Annotation
GO:0005985sucrose metabolic process
GO:0009058biosynthetic process
GO:0016157sucrose synthase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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