Annotation of co-expression genes

PH01000015G0230's details annotation

1.Annotation

ICBR annotation: Ser/Thr protein kinase, putative, expressed

Blast result AT4G18250 : 1.90E-83
Blast annotation: receptor serine/threonine kinase, putative

2.Location

Scaffold: PH01000015
Strand: -

RegionStartEnd
gene118143124326
mRNA118143124326
exon118143118652
exon118848119744
exon120057120089
exon122178122496
exon123515124326
CDS118511118652
CDS118848119744
CDS120057120089
CDS122178122496
CDS123515124217

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000533MBF1 Transcription_Regulator(from iTAK)
Protein_processing_in_endoplasmic_reticulum
cytoplasm,
RLK-Pelle_LRK10L-2 (from iTAK)
protein metabolic process,
protein refolding,
response to heat,
protein processing,
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13947.5GUB_WAK_bind39154
PF00069.24Pkinase402610

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0030247polysaccharide binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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