Annotation of co-expression genes

PH01000015G0390's details annotation

1.Annotation

ICBR annotation: Ser/Thr protein kinase, putative

Blast result AT5G38260 : 6.80E-54
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01000015
Strand: +

RegionStartEnd
gene236119240062
mRNA236119240062
exon236119237050
exon237177237209
exon237427237525
exon237691238217
exon239360240062
CDS236312237050
CDS237177237209
CDS237427237525
CDS237691238217
CDS239360240028

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000265RLK-Pelle_LRK10L-2 (from iTAK)
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Glycine,_serine_and_threonine_metabolism
tryptophan biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13947.5GUB_WAK_bind29130
PF14380.5WAK_assoc170239
PF00069.24Pkinase284431
PF13947.5GUB_WAK_bind478591

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0030247polysaccharide binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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