PH01000015G2370's details annotation
1.Annotation
ICBR annotation: OsRhmbd18 - Putative Rhomboid homologue, expressed
Blast result AT2G29050 : 2.50E-70
Blast annotation: RHOMBOID-like 1
2.Location
Scaffold: PH01000015
Strand: +
| Region | Start | End |
| gene | 1547525 | 1549915 |
| mRNA | 1547525 | 1549915 |
| exon | 1547525 | 1547917 |
| exon | 1548049 | 1548212 |
| exon | 1548295 | 1548497 |
| exon | 1548651 | 1548777 |
| exon | 1549304 | 1549915 |
| CDS | 1547764 | 1547917 |
| CDS | 1548049 | 1548212 |
| CDS | 1548295 | 1548497 |
| CDS | 1548651 | 1548777 |
| CDS | 1549304 | 1549315 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001331 | protein dephosphorylation, microtubule organizing center, spindle pole, dephosphorylation, microtubule cytoskeleton organization, C2H2 Transcription_Regulator(from PlantTFDB) isoprenoid biosynthetic process, selenium binding, |
| coexpression network | CFinderM001666 | integral to membrane, C2H2 Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001818 | C2H2 Transcription_Regulator(from PlantTFDB) fatty-acyl-CoA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01694.21 | Rhomboid | 11 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.