PH01000015G2440's details annotation
1.Annotation
ICBR annotation: transcription factor X1, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000015
Strand: -
| Region | Start | End |
| gene | 1578940 | 1585859 |
| mRNA | 1578940 | 1585859 |
| exon | 1578940 | 1579710 |
| exon | 1579965 | 1580076 |
| exon | 1580364 | 1580394 |
| exon | 1580720 | 1580788 |
| exon | 1582050 | 1582070 |
| exon | 1582306 | 1582487 |
| exon | 1583121 | 1585859 |
| CDS | 1579656 | 1579710 |
| CDS | 1579965 | 1580076 |
| CDS | 1580364 | 1580394 |
| CDS | 1580720 | 1580788 |
| CDS | 1582050 | 1582070 |
| CDS | 1582306 | 1582487 |
| CDS | 1583121 | 1584219 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000647 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
| coexpression network | CFinderM000846 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03470.13 | zf-XS | 72 | 118 |
| PF03468.13 | XS | 176 | 289 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.