PH01000015G2730's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G10480 : 1.50E-93
Blast annotation: Protein-tyrosine phosphatase-like, PTPLA
2.Location
Scaffold: PH01000015
Strand: +
| Region | Start | End |
| gene | 1782508 | 1787022 |
| mRNA | 1782508 | 1787022 |
| exon | 1782508 | 1782640 |
| exon | 1782744 | 1782855 |
| exon | 1784658 | 1784711 |
| exon | 1784956 | 1785026 |
| exon | 1785155 | 1785236 |
| exon | 1785333 | 1785429 |
| exon | 1785563 | 1787022 |
| CDS | 1782570 | 1782640 |
| CDS | 1782744 | 1782855 |
| CDS | 1784658 | 1784711 |
| CDS | 1784956 | 1785026 |
| CDS | 1785155 | 1785236 |
| CDS | 1785333 | 1785429 |
| CDS | 1785563 | 1785633 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04387.13 | PTPLA | 55 | 217 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid elongation | very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase?[EC:4.2.1.-] | ko00062 | K10703 |
| Biosynthesis of unsaturated fatty acids | very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase?[EC:4.2.1.-] | ko01040 | K10703 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.