PH01000016G0110's details annotation
1.Annotation
ICBR annotation: amidohydrolase family protein, expressed
Blast result AT2G35450 : 6.00E-119
Blast annotation: catalytics;hydrolases
2.Location
Scaffold: PH01000016
Strand: +
| Region | Start | End |
| gene | 71037 | 74780 |
| mRNA | 71037 | 74780 |
| exon | 71037 | 71454 |
| exon | 71556 | 71627 |
| exon | 72284 | 72363 |
| exon | 72520 | 72619 |
| exon | 72701 | 72754 |
| exon | 72850 | 72927 |
| exon | 73404 | 73501 |
| exon | 73616 | 73673 |
| exon | 74102 | 74223 |
| exon | 74465 | 74780 |
| CDS | 71362 | 71454 |
| CDS | 71556 | 71627 |
| CDS | 72284 | 72363 |
| CDS | 72520 | 72619 |
| CDS | 72701 | 72754 |
| CDS | 72850 | 72927 |
| CDS | 73404 | 73501 |
| CDS | 73616 | 73673 |
| CDS | 74102 | 74223 |
| CDS | 74465 | 74621 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04909.13 | Amidohydro_2 | 19 | 296 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.