PH01000016G0700's details annotation
1.Annotation
ICBR annotation: OsFBL16 - F-box domain and LRR containing protein, expressed
Blast result AT3G26810 : 0.00E+00
Blast annotation: auxin signaling F-box 2
2.Location
Scaffold: PH01000016
Strand: -
| Region | Start | End |
| gene | 547959 | 553335 |
| mRNA | 547959 | 553335 |
| exon | 547959 | 550068 |
| exon | 550171 | 550666 |
| exon | 551309 | 553335 |
| CDS | 549289 | 550068 |
| CDS | 550171 | 550666 |
| CDS | 551309 | 551760 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000008 | TKL-Pl-4 (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) transferase activity, transferring phosphorus-containing groups, protein phosphorylation, Spliceosome protein kinase activity, ATP binding, protein serine/threonine kinase activity, exocyst, chloroplast, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 4 | 35 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.