PH01000016G1050's details annotation
1.Annotation
ICBR annotation: transcription factor, putative, expressed
Blast result AT2G33550 : 3.10E-59
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01000016
Strand: -
| Region | Start | End |
| gene | 832203 | 835604 |
| mRNA | 832203 | 835604 |
| exon | 832203 | 832544 |
| exon | 832576 | 832603 |
| exon | 833669 | 833739 |
| exon | 834394 | 835604 |
| CDS | 832261 | 832544 |
| CDS | 832576 | 832603 |
| CDS | 833669 | 833739 |
| CDS | 834394 | 834988 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Trihelix |
| Transcription_Regulator(from PlantTFDB) | Trihelix |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13837.5 | Myb_DNA-bind_4 | 21 | 98 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.