Annotation of co-expression genes

PH01000017G0880's details annotation

1.Annotation

ICBR annotation: cyclin-dependent kinase A-1, putative, expressed

Blast result AT3G48750 : 1.00E-142
Blast annotation: cell division control 2

2.Location

Scaffold: PH01000017
Strand: -

RegionStartEnd
gene655432661019
mRNA655432661019
exon655432655876
exon656034656114
exon656199656252
exon656382656469
exon656563656753
exon656958657131
exon660119660239
exon660493660677
exon660767661019
CDS655868655876
CDS656034656114
CDS656199656252
CDS656382656469
CDS656563656753
CDS656958657131
CDS660119660239
CDS660493660677
CDS660767660775

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase4296

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.