PH01000017G1100's details annotation
1.Annotation
ICBR annotation: armadillo, putative
Blast result AT2G45720 : 0.00E+00
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000017
Strand: -
| Region | Start | End |
| gene | 776883 | 783040 |
| mRNA | 776883 | 783040 |
| exon | 776883 | 778912 |
| exon | 779441 | 779521 |
| exon | 779656 | 779755 |
| exon | 780835 | 780882 |
| exon | 780992 | 781176 |
| exon | 781280 | 781404 |
| exon | 781909 | 783040 |
| CDS | 777192 | 778912 |
| CDS | 779441 | 779521 |
| CDS | 779656 | 779755 |
| CDS | 780835 | 780882 |
| CDS | 780992 | 781176 |
| CDS | 781280 | 781404 |
| CDS | 781909 | 781946 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001601 | GH35 Glycoside_Hydrolases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00514.22 | Arm | 513 | 553 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.