Annotation of co-expression genes

PH01000017G1110's details annotation

1.Annotation

ICBR annotation: dihydrodipicolinate reductase, putative, expressed

Blast result AT5G52100 : 3.00E-108
Blast annotation: Dihydrodipicolinate reductase, bacterial/plant

2.Location

Scaffold: PH01000017
Strand: +

RegionStartEnd
gene783665790019
mRNA783665790019
exon783665786191
exon786609786690
exon786735786902
exon787000787074
exon787160787225
exon787742787837
exon787925788041
exon788279788371
exon789338789439
exon789508789594
exon789673790019
CDS786025786191
CDS786609786690
CDS786735786902
CDS787000787074
CDS787160787225
CDS787742787837
CDS787925788041
CDS788279788371
CDS789338789439
CDS789508789594
CDS789673789705

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01113.19DapB_N97224
PF05173.13DapB_C231361

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:00088394-hydroxy-tetrahydrodipicolinate reductase
GO:0009089lysine biosynthetic process via diaminopimelate
GO:0055114oxidation-reduction process
GO:0070402NADPH binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.