PH01000017G1770's details annotation
1.Annotation
ICBR annotation: AT-GTL1, putative, expressed
Blast result AT1G76880 : 8.00E-39
Blast annotation: Duplicated homeodomain-like superfamily protein
2.Location
Scaffold: PH01000017
Strand: +
| Region | Start | End |
| gene | 1223108 | 1227861 |
| mRNA | 1223108 | 1227861 |
| exon | 1223108 | 1224206 |
| exon | 1224821 | 1225001 |
| exon | 1225764 | 1226564 |
| exon | 1226652 | 1227861 |
| CDS | 1223890 | 1224206 |
| CDS | 1224821 | 1225001 |
| CDS | 1225764 | 1226564 |
| CDS | 1226652 | 1226984 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000523 | PLATZ Transcription_Regulator(from iTAK) Trihelix Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Trihelix |
| Transcription_Regulator(from PlantTFDB) | Trihelix |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13837.5 | Myb_DNA-bind_4 | 70 | 156 |
| PF13837.5 | Myb_DNA-bind_4 | 260 | 339 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.