Annotation of co-expression genes

PH01000018G0160's details annotation

1.Annotation

ICBR annotation: trehalose synthase, putative, expressed

Blast result AT1G06410 : 0.00E+00
Blast annotation: trehalose-phosphatase/synthase 7

2.Location

Scaffold: PH01000018
Strand: -

RegionStartEnd
gene8897996276
mRNA8897996276
exon8897991500
exon9218792505
exon9313096276
CDS9112991500
CDS9218792505
CDS9313095225

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000554EIL Transcription_Regulator(from PlantTFDB)
GT20 GlycosylTransferases
STE_STE11 (from iTAK)
PHD Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT20

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00982.20Glyco_transf_2080581
PF02358.15Trehalose_PPase631879

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismtrehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15;EC:3.1.3.12]ko00500K16055

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005992trehalose biosynthetic process
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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