Annotation of co-expression genes

PH01000018G0590's details annotation

1.Annotation

ICBR annotation: ras-related protein, putative, expressed

Blast result AT3G18820 : 4.00E-104
Blast annotation: RAB GTPase homolog G3F

2.Location

Scaffold: PH01000018
Strand: -

RegionStartEnd
gene345917350401
mRNA345917350401
exon345917346440
exon347064347144
exon347227347373
exon348567348893
exon349660349759
exon350011350401
CDS345982346440
CDS347064347144
CDS347227347373
CDS348567348893
CDS349660349759
CDS350011350063

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00071.21Ras10177

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
EndocytosisRas-related protein Rab-7Ako04144K07897
PhagosomeRas-related protein Rab-7Ako04145K07897

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005622intracellular
GO:0006184GTP catabolic process
GO:0006886intracellular protein transport
GO:0006913nucleocytoplasmic transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
GO:0015031protein transport
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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