PH01000018G0810's details annotation
1.Annotation
ICBR annotation: GTP-binding protein typA/bipA, putative, expressed
Blast result AT2G31060 : 6.00E-83
Blast annotation: elongation factor family protein
2.Location
Scaffold: PH01000018
Strand: +
| Region | Start | End |
| gene | 482178 | 485808 |
| mRNA | 482178 | 485808 |
| exon | 482178 | 482673 |
| exon | 484385 | 484459 |
| exon | 484553 | 484703 |
| exon | 485439 | 485507 |
| exon | 485591 | 485808 |
| CDS | 482572 | 482673 |
| CDS | 484385 | 484459 |
| CDS | 484553 | 484703 |
| CDS | 485439 | 485507 |
| CDS | 485591 | 485808 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00009.26 | GTP_EFTU | 2 | 178 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.