PH01000018G0940's details annotation
1.Annotation
ICBR annotation: auxin response factor, putative, expressed
Blast result AT2G33860 : 2.20E-89
Blast annotation: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
2.Location
Scaffold: PH01000018
Strand: -
| Region | Start | End |
| gene | 596093 | 607317 |
| mRNA | 596093 | 607317 |
| exon | 596093 | 597153 |
| exon | 597249 | 597411 |
| exon | 598233 | 598403 |
| exon | 599054 | 599131 |
| exon | 600031 | 600106 |
| exon | 600180 | 600296 |
| exon | 600687 | 600851 |
| exon | 600933 | 601023 |
| exon | 602894 | 602978 |
| exon | 603076 | 603258 |
| exon | 603740 | 603796 |
| exon | 605387 | 607317 |
| CDS | 596342 | 597153 |
| CDS | 597249 | 597411 |
| CDS | 598233 | 598403 |
| CDS | 599054 | 599131 |
| CDS | 600031 | 600106 |
| CDS | 600180 | 600296 |
| CDS | 600687 | 600851 |
| CDS | 600933 | 601023 |
| CDS | 602894 | 602978 |
| CDS | 603076 | 603258 |
| CDS | 603740 | 603796 |
| CDS | 605387 | 605422 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000480 | TKL-Pl-6 (from iTAK) ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) glycerol metabolic process, glycerophosphodiester phosphodiesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 63 | 163 |
| PF06507.12 | Auxin_resp | 190 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.