PH01000018G1460's details annotation
1.Annotation
ICBR annotation: slTCP3, putative, expressed
Blast result AT3G15030 : 1.20E-38
Blast annotation: TCP family transcription factor 4
2.Location
Scaffold: PH01000018
Strand: +
| Region | Start | End |
| gene | 906436 | 909312 |
| mRNA | 906436 | 909312 |
| exon | 906436 | 907239 |
| exon | 907741 | 909312 |
| CDS | 907138 | 907239 |
| CDS | 907741 | 908859 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TCP |
| Transcription_Regulator(from PlantTFDB) | TCP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03634.12 | TCP | 100 | 215 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.