PH01000018G1920's details annotation
1.Annotation
ICBR annotation: SGS domain containing protein, expressed
Blast result AT1G30070 : 6.20E-66
Blast annotation: SGS domain-containing protein
2.Location
Scaffold: PH01000018
Strand: -
| Region | Start | End |
| gene | 1181733 | 1185307 |
| mRNA | 1181733 | 1185307 |
| exon | 1181733 | 1182355 |
| exon | 1182434 | 1182493 |
| exon | 1182964 | 1183023 |
| exon | 1183820 | 1184059 |
| exon | 1184905 | 1185042 |
| exon | 1185153 | 1185307 |
| CDS | 1182251 | 1182355 |
| CDS | 1182434 | 1182493 |
| CDS | 1182964 | 1183023 |
| CDS | 1183820 | 1184059 |
| CDS | 1184905 | 1185042 |
| CDS | 1185153 | 1185269 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000105 | amino acid binding, TKL-Pl-4 (from iTAK) spliceosomal complex assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09032.10 | Siah-Interact_N | 4 | 64 |
| PF04969.15 | CS | 74 | 150 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.