PH01000018G2540's details annotation
1.Annotation
ICBR annotation: ATROPGEF7/ROPGEF7, putative, expressed
Blast result AT4G13240 : 1.00E-135
Blast annotation: RHO guanyl-nucleotide exchange factor 9
2.Location
Scaffold: PH01000018
Strand: +
| Region | Start | End |
| gene | 1667274 | 1670538 |
| mRNA | 1667274 | 1670538 |
| exon | 1667274 | 1668240 |
| exon | 1668352 | 1668468 |
| exon | 1668604 | 1668818 |
| exon | 1669014 | 1669289 |
| exon | 1669389 | 1669709 |
| exon | 1669918 | 1670538 |
| CDS | 1668000 | 1668240 |
| CDS | 1668352 | 1668468 |
| CDS | 1668604 | 1668818 |
| CDS | 1669014 | 1669289 |
| CDS | 1669389 | 1669709 |
| CDS | 1669918 | 1670328 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000298 | WRKY Transcription_Regulator(from PlantTFDB) Rho guanyl-nucleotide exchange factor activity, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, regulation of transcription, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03759.12 | PRONE | 80 | 426 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005089 | Rho guanyl-nucleotide exchange factor activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.