PH01000018G2720's details annotation
1.Annotation
ICBR annotation: tesmin/TSO1-like CXC domain containing protein, expressed
Blast result AT4G29000 : 4.70E-90
Blast annotation: Tesmin/TSO1-like CXC domain-containing protein
2.Location
Scaffold: PH01000018
Strand: -
| Region | Start | End |
| gene | 1778975 | 1789256 |
| mRNA | 1778975 | 1789256 |
| exon | 1778975 | 1779767 |
| exon | 1779851 | 1779948 |
| exon | 1780687 | 1781043 |
| exon | 1782923 | 1783100 |
| exon | 1784070 | 1784174 |
| exon | 1788669 | 1788771 |
| exon | 1788864 | 1789256 |
| CDS | 1779554 | 1779767 |
| CDS | 1779851 | 1779948 |
| CDS | 1780687 | 1781043 |
| CDS | 1782923 | 1783100 |
| CDS | 1784070 | 1784174 |
| CDS | 1788669 | 1788771 |
| CDS | 1788864 | 1788918 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | CPP |
| Transcription_Regulator(from PlantTFDB) | CPP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03638.14 | TCR | 75 | 110 |
| PF03638.14 | TCR | 161 | 196 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.