PH01000019G0310's details annotation
1.Annotation
ICBR annotation: 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Blast result AT5G03650 : 0
Blast annotation: starch branching enzyme 2.2
2.Location
Scaffold: PH01000019
Strand: +
| Region | Start | End |
| gene | 259927 | 277528 |
| mRNA | 259927 | 277528 |
| exon | 259927 | 260223 |
| exon | 260378 | 260520 |
| exon | 260870 | 261099 |
| exon | 261507 | 261605 |
| exon | 261693 | 261735 |
| exon | 261943 | 262002 |
| exon | 262672 | 262752 |
| exon | 262837 | 262953 |
| exon | 263163 | 263246 |
| exon | 263880 | 264001 |
| exon | 264503 | 264622 |
| exon | 265768 | 265897 |
| exon | 265990 | 266100 |
| exon | 266358 | 266468 |
| exon | 266640 | 266768 |
| exon | 267841 | 267944 |
| exon | 268263 | 268407 |
| exon | 269367 | 269514 |
| exon | 269658 | 269758 |
| exon | 270006 | 270083 |
| exon | 270859 | 271251 |
| exon | 271933 | 272088 |
| exon | 272598 | 272672 |
| exon | 272769 | 272843 |
| exon | 274260 | 274367 |
| exon | 274821 | 274931 |
| exon | 275051 | 275131 |
| exon | 276498 | 277528 |
| CDS | 260073 | 260223 |
| CDS | 260378 | 260520 |
| CDS | 260870 | 261099 |
| CDS | 261507 | 261605 |
| CDS | 261693 | 261735 |
| CDS | 261943 | 262002 |
| CDS | 262672 | 262752 |
| CDS | 262837 | 262953 |
| CDS | 263163 | 263246 |
| CDS | 263880 | 264001 |
| CDS | 264503 | 264622 |
| CDS | 265768 | 265897 |
| CDS | 265990 | 266100 |
| CDS | 266358 | 266468 |
| CDS | 266640 | 266768 |
| CDS | 267841 | 267944 |
| CDS | 268263 | 268407 |
| CDS | 269367 | 269514 |
| CDS | 269658 | 269758 |
| CDS | 270006 | 270083 |
| CDS | 270859 | 271251 |
| CDS | 271933 | 272088 |
| CDS | 272598 | 272672 |
| CDS | 272769 | 272843 |
| CDS | 274260 | 274367 |
| CDS | 274821 | 274931 |
| CDS | 275051 | 275131 |
| CDS | 276498 | 276572 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Carbohydrate-Binding_Modules | CBM48 |
| Glycoside_Hydrolases | GH13 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02922.17 | CBM_48 | 202 | 285 |
| PF00128.23 | Alpha-amylase | 351 | 596 |
| PF02806.17 | Alpha-amylase_C | 908 | 1002 |
| PF04949.12 | Transcrip_act | 994 | 1123 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] | ko00500 | K00700 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0043169 | cation binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.