PH01000019G0430's details annotation
1.Annotation
ICBR annotation: amino acid kinase, putative, expressed
Blast result AT3G10030 : 7.50E-46
Blast annotation: aspartate/glutamate/uridylate kinase family protein
2.Location
Scaffold: PH01000019
Strand: -
| Region | Start | End |
| gene | 338352 | 344501 |
| mRNA | 338352 | 344501 |
| exon | 338352 | 339221 |
| exon | 339446 | 339589 |
| exon | 339896 | 340069 |
| exon | 341002 | 341118 |
| exon | 342103 | 342156 |
| exon | 342248 | 342377 |
| exon | 342471 | 344501 |
| CDS | 338892 | 339221 |
| CDS | 339446 | 339589 |
| CDS | 339896 | 340069 |
| CDS | 341002 | 341118 |
| CDS | 342103 | 342156 |
| CDS | 342248 | 342377 |
| CDS | 342471 | 343297 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000422 | cellular amino acid biosynthetic process, Trihelix Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Trihelix |
| Transcription_Regulator(from PlantTFDB) | Trihelix |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13837.5 | Myb_DNA-bind_4 | 148 | 244 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008652 | cellular amino acid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.