Annotation of co-expression genes

PH01000019G0470's details annotation

1.Annotation

ICBR annotation: ERD1 protein, chloroplast precursor, putative, expressed

Blast result AT5G51070 : 0.00E+00
Blast annotation: Clp ATPase

2.Location

Scaffold: PH01000019
Strand: +

RegionStartEnd
gene376151382269
mRNA376151382269
exon376151377069
exon377126377658
exon378129378298
exon378398378627
exon378722378830
exon378920379047
exon379152379253
exon379333379614
exon379711379835
exon379931380225
exon380330380563
exon380902381135
exon381372382269
CDS377064377069
CDS377126377658
CDS378129378298
CDS378398378627
CDS378722378830
CDS378920379047
CDS379152379253
CDS379333379614
CDS379711379835
CDS379931380225
CDS380330380563
CDS380902381135
CDS381372381710

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02861.19Clp_N64107
PF02861.19Clp_N145192
PF00004.28AAA283390
PF07724.13AAA_2631805
PF10431.8ClpB_D2-small812890

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0017111nucleoside-triphosphatase activity
GO:0019538protein metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.