PH01000019G0530's details annotation
1.Annotation
ICBR annotation: AMP-binding enzyme, putative, expressed
Blast result AT5G36880 : 0.00E+00
Blast annotation: acetyl-CoA synthetase
2.Location
Scaffold: PH01000019
Strand: -
| Region | Start | End |
| gene | 427795 | 434961 |
| mRNA | 427795 | 434961 |
| exon | 427795 | 428206 |
| exon | 428665 | 428763 |
| exon | 428870 | 428960 |
| exon | 429065 | 429121 |
| exon | 429227 | 429462 |
| exon | 429493 | 429561 |
| exon | 429670 | 429748 |
| exon | 429843 | 429919 |
| exon | 430804 | 430917 |
| exon | 431233 | 431323 |
| exon | 431442 | 431530 |
| exon | 431600 | 431701 |
| exon | 431832 | 431914 |
| exon | 432780 | 432948 |
| exon | 433037 | 433159 |
| exon | 433286 | 433441 |
| exon | 433580 | 433765 |
| exon | 434032 | 434961 |
| CDS | 428021 | 428206 |
| CDS | 428665 | 428763 |
| CDS | 428870 | 428960 |
| CDS | 429065 | 429121 |
| CDS | 429227 | 429462 |
| CDS | 429493 | 429561 |
| CDS | 429670 | 429748 |
| CDS | 429843 | 429919 |
| CDS | 430804 | 430917 |
| CDS | 431233 | 431323 |
| CDS | 431442 | 431530 |
| CDS | 431600 | 431701 |
| CDS | 431832 | 431914 |
| CDS | 432780 | 432948 |
| CDS | 433037 | 433159 |
| CDS | 433286 | 433441 |
| CDS | 433580 | 433765 |
| CDS | 434032 | 434241 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16177.4 | ACAS_N | 84 | 145 |
| PF00501.27 | AMP-binding | 152 | 613 |
| PF13193.5 | AMP-binding_C | 622 | 700 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | acetyl-CoA synthetase [EC:6.2.1.1] | ko00010 | K01895 |
| Pyruvate metabolism | acetyl-CoA synthetase [EC:6.2.1.1] | ko00620 | K01895 |
| Propanoate metabolism | acetyl-CoA synthetase [EC:6.2.1.1] | ko00640 | K01895 |
| Carbon fixation pathways in prokaryotes | acetyl-CoA synthetase [EC:6.2.1.1] | ko00720 | K01895 |
| Methane metabolism | acetyl-CoA synthetase [EC:6.2.1.1] | ko00680 | K01895 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.