Annotation of co-expression genes

PH01000019G1140's details annotation

1.Annotation

ICBR annotation: U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed

Blast result AT1G20960 : 0.00E+00
Blast annotation: U5 small nuclear ribonucleoprotein helicase, putative

2.Location

Scaffold: PH01000019
Strand: +

RegionStartEnd
gene833779846856
mRNA833779846856
exon833779837524
exon837631839883
exon841846842235
exon842327846856
CDS836802837524
CDS837631839883
CDS841846842235
CDS842327845497

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001184CAMK_CDPK (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00270.28DEAD521695
PF00271.30Helicase_C750894
PF02889.15Sec6310181318
PF00270.28DEAD13651534
PF02889.15Sec6318502168

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomepre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]ko03041K12854

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0005524ATP binding
GO:0008026ATP-dependent helicase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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