PH01000019G1710's details annotation
1.Annotation
ICBR annotation: OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT3G10410 : 1.00E-152
Blast annotation: SERINE CARBOXYPEPTIDASE-LIKE 49
2.Location
Scaffold: PH01000019
Strand: -
| Region | Start | End |
| gene | 1238690 | 1242774 |
| mRNA | 1238690 | 1242774 |
| exon | 1238690 | 1238953 |
| exon | 1239507 | 1239765 |
| exon | 1239851 | 1239939 |
| exon | 1240232 | 1240382 |
| exon | 1240476 | 1240619 |
| exon | 1241222 | 1241311 |
| exon | 1241953 | 1242121 |
| exon | 1242424 | 1242774 |
| CDS | 1238862 | 1238953 |
| CDS | 1239507 | 1239765 |
| CDS | 1239851 | 1239939 |
| CDS | 1240232 | 1240382 |
| CDS | 1240476 | 1240619 |
| CDS | 1241222 | 1241311 |
| CDS | 1241953 | 1242121 |
| CDS | 1242424 | 1242722 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 83 | 402 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.