PH01000019G2230's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
Blast result AT2G17220 : 8.00E-134
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000019
Strand: +
| Region | Start | End |
| gene | 1641175 | 1645598 |
| mRNA | 1641175 | 1645598 |
| exon | 1641175 | 1641575 |
| exon | 1642202 | 1642572 |
| exon | 1643253 | 1643388 |
| exon | 1643650 | 1643786 |
| exon | 1643868 | 1643991 |
| exon | 1644731 | 1645598 |
| CDS | 1641509 | 1641575 |
| CDS | 1642202 | 1642572 |
| CDS | 1643253 | 1643388 |
| CDS | 1643650 | 1643786 |
| CDS | 1643868 | 1643991 |
| CDS | 1644731 | 1645179 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001537 | vacuolar proton-transporting V-type ATPase, V1 domain, ATP hydrolysis coupled proton transport, MYB_related Transcription_Regulator(from PlantTFDB) RLK-Pelle_RLCK-VIIa-2 (from iTAK) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001715 | vacuolar proton-transporting V-type ATPase, V1 domain, RLK-Pelle_RLCK-VIIa-2 (from iTAK) STE_STE11 (from iTAK) ATP hydrolysis coupled proton transport, |
| coexpression network | CFinderM001757 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) protein phosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 98 | 374 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.