PH01000019G2290's details annotation
1.Annotation
ICBR annotation: SNARE domain containing protein, putative, expressed
Blast result AT1G16240 : 9.10E-81
Blast annotation: syntaxin of plants 51
2.Location
Scaffold: PH01000019
Strand: -
| Region | Start | End |
| gene | 1678097 | 1681298 |
| mRNA | 1678097 | 1681298 |
| exon | 1678097 | 1678654 |
| exon | 1678733 | 1678833 |
| exon | 1679102 | 1679205 |
| exon | 1679382 | 1679483 |
| exon | 1680639 | 1681298 |
| CDS | 1678550 | 1678654 |
| CDS | 1678733 | 1678833 |
| CDS | 1679102 | 1679205 |
| CDS | 1679382 | 1679483 |
| CDS | 1680639 | 1680853 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000635 | CK1_CK1 (from iTAK) regulation of cell shape, cell division, SNARE_interactions_in_vesicular_transport Pyrimidine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05739.18 | SNARE | 173 | 224 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| SNARE interactions in vesicular transport | syntaxin 8 | ko04130 | K08501 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.