Annotation of co-expression genes

PH01000020G0420's details annotation

1.Annotation

ICBR annotation: SWIRM domain containing protein, expressed

Blast result AT2G47620 : 3.80E-74
Blast annotation: SWITCH/sucrose nonfermenting 3A

2.Location

Scaffold: PH01000020
Strand: +

RegionStartEnd
gene286500298019
mRNA286500298019
exon286500287094
exon287765288049
exon289088289269
exon290542291088
exon291696292184
exon292281292444
exon292523292575
exon293587293741
exon294474294587
exon295694295727
exon295809295916
exon296289296391
exon297431297687
exon297821298019
CDS286789287094
CDS287765288049
CDS289088289269
CDS290542291088
CDS291696292184
CDS292281292444
CDS292523292575
CDS293587293741
CDS294474294587
CDS295694295727
CDS295809295916
CDS296289296391
CDS297431297687
CDS297821297897

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04433.16SWIRM266340
PF00249.30Myb_DNA-binding478519
PF16495.4SWIRM-assoc_1695767

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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