PH01000020G1010's details annotation
1.Annotation
ICBR annotation: BTBZ4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed
Blast result AT3G48360 : 6.40E-67
Blast annotation: BTB and TAZ domain protein 2
2.Location
Scaffold: PH01000020
Strand: +
| Region | Start | End |
| gene | 703192 | 705955 |
| mRNA | 703192 | 705955 |
| exon | 703192 | 703747 |
| exon | 703861 | 703994 |
| exon | 704031 | 704696 |
| exon | 705448 | 705955 |
| CDS | 703643 | 703747 |
| CDS | 703861 | 703994 |
| CDS | 704031 | 704696 |
| CDS | 705448 | 705616 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TAZ |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00651.30 | BTB | 14 | 125 |
| PF02135.15 | zf-TAZ | 215 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003712 | transcription cofactor activity |
| GO:0004402 | histone acetyltransferase activity |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.