PH01000020G1340's details annotation
1.Annotation
ICBR annotation: 26S proteasome non-ATPase regulatory subunit 6, putative, expressed
Blast result AT4G24820 : 0.00E+00
Blast annotation: 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain
2.Location
Scaffold: PH01000020
Strand: +
| Region | Start | End |
| gene | 914130 | 917225 |
| mRNA | 914130 | 917225 |
| exon | 914130 | 914453 |
| exon | 914536 | 914650 |
| exon | 915346 | 915436 |
| exon | 915524 | 915669 |
| exon | 915764 | 915983 |
| exon | 916064 | 916172 |
| exon | 916303 | 916471 |
| exon | 916577 | 917225 |
| CDS | 914312 | 914453 |
| CDS | 914536 | 914650 |
| CDS | 915346 | 915436 |
| CDS | 915524 | 915669 |
| CDS | 915764 | 915983 |
| CDS | 916064 | 916172 |
| CDS | 916303 | 916471 |
| CDS | 916577 | 916751 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10602.8 | RPN7 | 65 | 238 |
| PF01399.26 | PCI | 254 | 356 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Proteasome | 26S proteasome regulatory subunit N7 | ko03051 | K03037 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.