PH01000020G1490's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT1G13450 : 4.00E-120
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01000020
Strand: +
| Region | Start | End |
| gene | 1016528 | 1021991 |
| mRNA | 1016528 | 1021991 |
| exon | 1016528 | 1018241 |
| exon | 1018853 | 1018891 |
| exon | 1019568 | 1019699 |
| exon | 1020216 | 1020443 |
| exon | 1021404 | 1021991 |
| CDS | 1017695 | 1018241 |
| CDS | 1018853 | 1018891 |
| CDS | 1019568 | 1019699 |
| CDS | 1020216 | 1020443 |
| CDS | 1021404 | 1021618 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Trihelix |
| Transcription_Regulator(from PlantTFDB) | Trihelix |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13837.5 | Myb_DNA-bind_4 | 49 | 139 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.