PH01000020G1780's details annotation
1.Annotation
ICBR annotation: osFTL6 FT-Like6 homologous to Flowering Locus T gene
Blast result AT1G65480 : 7.80E-35
Blast annotation: PEBP (phosphatidylethanolamine-binding protein) family protein
2.Location
Scaffold: PH01000020
Strand: -
| Region | Start | End |
| gene | 1188211 | 1189528 |
| mRNA | 1188211 | 1189528 |
| exon | 1188211 | 1188332 |
| exon | 1188451 | 1188512 |
| exon | 1189253 | 1189528 |
| CDS | 1188254 | 1188332 |
| CDS | 1188451 | 1188512 |
| CDS | 1189253 | 1189444 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000460 | drug transmembrane transport, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01161.19 | PBP | 46 | 92 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.