PH01000020G2310's details annotation
1.Annotation
ICBR annotation: 4-nitrophenylphosphatase, putative, expressed
Blast result AT5G36700 : 7.70E-64
Blast annotation: 2-phosphoglycolate phosphatase 1
2.Location
Scaffold: PH01000020
Strand: -
| Region | Start | End |
| gene | 1524205 | 1527142 |
| mRNA | 1524205 | 1527142 |
| exon | 1524205 | 1524593 |
| exon | 1524756 | 1524786 |
| exon | 1525511 | 1525630 |
| exon | 1525849 | 1525920 |
| exon | 1526017 | 1526088 |
| exon | 1526170 | 1526262 |
| exon | 1526368 | 1526435 |
| exon | 1526522 | 1527142 |
| CDS | 1524487 | 1524593 |
| CDS | 1524756 | 1524786 |
| CDS | 1525511 | 1525630 |
| CDS | 1525849 | 1525920 |
| CDS | 1526017 | 1526088 |
| CDS | 1526170 | 1526262 |
| CDS | 1526368 | 1526435 |
| CDS | 1526522 | 1526609 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13344.5 | Hydrolase_6 | 24 | 126 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.