PH01000020G2640's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G43320 : 1.00E-130
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000020
Strand: +
| Region | Start | End |
| gene | 1759708 | 1763179 |
| mRNA | 1759708 | 1763179 |
| exon | 1759708 | 1760063 |
| exon | 1760211 | 1760273 |
| exon | 1760407 | 1760473 |
| exon | 1760574 | 1760674 |
| exon | 1761004 | 1761048 |
| exon | 1761218 | 1761679 |
| exon | 1762532 | 1763179 |
| CDS | 1759932 | 1760063 |
| CDS | 1760211 | 1760273 |
| CDS | 1760407 | 1760473 |
| CDS | 1760574 | 1760674 |
| CDS | 1761004 | 1761048 |
| CDS | 1761218 | 1761679 |
| CDS | 1762532 | 1762702 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10294.8 | Methyltransf_16 | 90 | 147 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.