PH01000021G0280's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, expressed
Blast result AT5G14770 : 2.00E-169
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000021
Strand: +
| Region | Start | End |
| gene | 154642 | 161399 |
| mRNA | 154642 | 161399 |
| exon | 154642 | 157903 |
| exon | 159721 | 159816 |
| exon | 160760 | 161399 |
| CDS | 155210 | 157903 |
| CDS | 159721 | 159816 |
| CDS | 160760 | 161116 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 107 | 155 |
| PF01535.19 | PPR | 183 | 211 |
| PF13041.5 | PPR_2 | 214 | 262 |
| PF13041.5 | PPR_2 | 283 | 332 |
| PF01535.19 | PPR | 356 | 381 |
| PF13041.5 | PPR_2 | 388 | 437 |
| PF13041.5 | PPR_2 | 458 | 506 |
| PF13041.5 | PPR_2 | 529 | 576 |
| PF13041.5 | PPR_2 | 598 | 645 |
| PF01535.19 | PPR | 707 | 736 |
| PF13041.5 | PPR_2 | 738 | 785 |
| PF01535.19 | PPR | 812 | 841 |
| PF13041.5 | PPR_2 | 843 | 889 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.