PH01000021G0720's details annotation
1.Annotation
ICBR annotation: No apical meristem protein, putative, expressed
Blast result AT3G10500 : 3.40E-65
Blast annotation: NAC domain containing protein 53
2.Location
Scaffold: PH01000021
Strand: -
| Region | Start | End |
| gene | 414445 | 419478 |
| mRNA | 414445 | 419478 |
| exon | 414445 | 415017 |
| exon | 415199 | 415319 |
| exon | 415458 | 416159 |
| exon | 416546 | 416746 |
| exon | 417562 | 419478 |
| CDS | 414593 | 415017 |
| CDS | 415199 | 415319 |
| CDS | 415458 | 416159 |
| CDS | 416546 | 416746 |
| CDS | 417562 | 418035 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001483 | eukaryotic translation initiation factor 3 complex, cytoplasm, valyl-tRNA aminoacylation, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding G-protein coupled receptor signaling pathway, Aminoacyl-tRNA_biosynthesis |
| coexpression network | CFinderM001624 | nuclear pore, ribonucleoside_binding NAC Transcription_Regulator(from PlantTFDB) 1,3-beta-D-glucan synthase activity, DNA-directed RNA polymerase activity, |
| coexpression network | CFinderM001733 | nucleotide-sugar transport, carbohydrate transport, nucleotide-sugar transmembrane transporter activity, Golgi membrane, sugar:hydrogen symporter activity, metallopeptidase activity, NAC Transcription_Regulator(from PlantTFDB) metalloendopeptidase activity, |
| coexpression network | CFinderM001734 | NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001791 | valyl-tRNA aminoacylation, eukaryotic translation initiation factor 3 complex, cytoplasm, aminoacyl-tRNA_editing_activity valine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis NAC Transcription_Regulator(from PlantTFDB) tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NAC |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02365.14 | NAM | 17 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.