PH01000021G1240's details annotation
1.Annotation
ICBR annotation: Ser/Thr protein phosphatase family protein, putative, expressed
Blast result AT2G39840 : 3.00E-154
Blast annotation: type one serine/threonine protein phosphatase 4
2.Location
Scaffold: PH01000021
Strand: +
| Region | Start | End |
| gene | 725761 | 731475 |
| mRNA | 725761 | 731475 |
| exon | 725761 | 726621 |
| exon | 727768 | 728327 |
| exon | 728423 | 728617 |
| exon | 730661 | 731475 |
| CDS | 726444 | 726621 |
| CDS | 727768 | 728327 |
| CDS | 728423 | 728617 |
| CDS | 730661 | 731041 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16891.4 | STPPase_N | 6 | 53 |
| PF00149.27 | Metallophos | 55 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein phosphatase 1, catalytic subunit [EC:3.1.3.16] | ko03015 | K06269 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.