PH01000021G1280's details annotation
1.Annotation
ICBR annotation: DNL zinc finger domain containing protein, putative, expressed
Blast result AT3G54826 : 6.30E-41
Blast annotation: Zim17-type zinc finger protein
2.Location
Scaffold: PH01000021
Strand: +
| Region | Start | End |
| gene | 754147 | 756381 |
| mRNA | 754147 | 756381 |
| exon | 754147 | 754662 |
| exon | 755631 | 756381 |
| CDS | 754617 | 754662 |
| CDS | 755631 | 756115 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000147 | mitochondrial inner membrane presequence translocase complex, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, GRAS Transcription_Regulator(from PlantTFDB) Endocytosis vesicle docking involved in exocytosis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05180.11 | zf-DNL | 85 | 146 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.