Annotation of co-expression genes

PH01000022G0990's details annotation

1.Annotation

ICBR annotation: CAMK_CAMK_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

Blast result AT3G51850 : 0.00E+00
Blast annotation: calcium-dependent protein kinase 13

2.Location

Scaffold: PH01000022
Strand: +

RegionStartEnd
gene671487679175
mRNA671487679175
exon671487672250
exon672362672695
exon674372674749
exon676079676149
exon676495676662
exon677283677513
exon677607679175
CDS671915672250
CDS672362672695
CDS674372674749
CDS676079676149
CDS676495676662
CDS677283677513
CDS677607677756

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000008TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase70328
PF13499.5EF-hand_7374434
PF13499.5EF-hand_7446509

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005509calcium ion binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.