PH01000022G1030's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G08330 : 7.20E-32
Blast annotation: -
2.Location
Scaffold: PH01000022
Strand: +
| Region | Start | End |
| gene | 703802 | 705767 |
| mRNA | 703802 | 705767 |
| exon | 703802 | 704384 |
| exon | 705049 | 705767 |
| CDS | 704335 | 704384 |
| CDS | 705049 | 705457 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000044 | integral to membrane, peptide-methionine_(R)-S-oxide_reductase_activity NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000335 | acid-amino acid ligase activity, peptide-methionine_(R)-S-oxide_reductase_activity Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0033743 | peptide-methionine (R)-S-oxide reductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.